Self-gated cardiac Cine MRI of the rat on a clinical 3 T MRI system
Corresponding Author
Martin Krämer
Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller University Jena, Philosophenweg 3, D-07743 Jena, Germany
Both authors contributed equally to the study.Correspondence to: M. Krämer, Medical Physics Group, IDIR, Jena University Hospital, Philosophenweg 3, D-07743 Jena, Germany. E-mail: [email protected]
Search for more papers by this authorKarl-Heinz Herrmann
Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller University Jena, Philosophenweg 3, D-07743 Jena, Germany
Both authors contributed equally to the study.Search for more papers by this authorJudith Biermann
Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller University Jena, Philosophenweg 3, D-07743 Jena, Germany
Search for more papers by this authorSebastian Freiburger
Department of Cardiothoracic Surgery, Jena University Hospital – Friedrich Schiller University Jena, Erlanger Allee 101, D-07747 Jena, Germany
Search for more papers by this authorMichael Schwarzer
Department of Cardiothoracic Surgery, Jena University Hospital – Friedrich Schiller University Jena, Erlanger Allee 101, D-07747 Jena, Germany
Search for more papers by this authorJürgen R. Reichenbach
Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller University Jena, Philosophenweg 3, D-07743 Jena, Germany
Search for more papers by this authorCorresponding Author
Martin Krämer
Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller University Jena, Philosophenweg 3, D-07743 Jena, Germany
Both authors contributed equally to the study.Correspondence to: M. Krämer, Medical Physics Group, IDIR, Jena University Hospital, Philosophenweg 3, D-07743 Jena, Germany. E-mail: [email protected]
Search for more papers by this authorKarl-Heinz Herrmann
Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller University Jena, Philosophenweg 3, D-07743 Jena, Germany
Both authors contributed equally to the study.Search for more papers by this authorJudith Biermann
Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller University Jena, Philosophenweg 3, D-07743 Jena, Germany
Search for more papers by this authorSebastian Freiburger
Department of Cardiothoracic Surgery, Jena University Hospital – Friedrich Schiller University Jena, Erlanger Allee 101, D-07747 Jena, Germany
Search for more papers by this authorMichael Schwarzer
Department of Cardiothoracic Surgery, Jena University Hospital – Friedrich Schiller University Jena, Erlanger Allee 101, D-07747 Jena, Germany
Search for more papers by this authorJürgen R. Reichenbach
Medical Physics Group, Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller University Jena, Philosophenweg 3, D-07743 Jena, Germany
Search for more papers by this authorAbstract
The ability to perform small animal functional cardiac imaging on clinical MRI scanners may be of particular value in cases in which the availability of a dedicated high field animal MRI scanner is limited. Here, we propose radial MR cardiac imaging in the rat on a whole-body clinical 3 T scanner in combination with interspersed projection navigators for self-gating without any additional external triggering requirements for electrocardiogram (ECG) and respiration. Single navigator readouts were interspersed using the same TR and a high navigator frequency of 54 Hz into a radial golden-angle acquisition. The extracted navigator function was thresholded to exclude data for reconstruction from inhalation phases during the breathing cycle, enabling free breathing acquisition. To minimize flow artifacts in the dynamic cine images a center-out half echo radial acquisition scheme with ramp sampling was used. Navigator functions were derived from the corresponding projection navigator data from which both respiration and cardiac cycles were extracted. Self-gated cine acquisition resulted in high-quality cardiac images which were free of major artifacts with spatial resolution of up to 0.21 × 0.21 × 1.00 mm3 and a contrast-to-noise ratio (CNR) of 21 ± 3 between the myocardium and left ventricle. Self-gated golden ratio based radial acquisition successfully acquired cine images of the rat heart on a clinical MRI system without the need for dedicated animal ECG equipment. Copyright © 2014 John Wiley & Sons, Ltd.
Supporting Information
Caption for Movie1_ShortAxis.wmv: Reconstructed short axis cardiac cine images of a rat based with a spatial resolution of 0.21 × 0.21 × 1.00 mm3 and a temporal resolution of 1 TR.
Caption for Movie2_OutflowTract: Cardiac orientation partly similar to a human four chamber view showing the left atrium and ventricle as well as the outflow tract of the left ventricle acquired with a resolution of 0.23 × 0.23 × 1.00mm3
Filename | Description |
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nbm3234-sup-0001-videoS1.wmvWindows Media video, 97.5 KB | Supporting information |
nbm3234-sup-0002-videoS2.wmvWindows Media video, 222.4 KB | Supporting information |
Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
References
- 1 Hiba B, Richard N, Janier M, Croisille P. Cardiac and respiratory double self-gated cine MRI in the mouse at 7 T. Magn. Reson. Med. 2006; 55(3): 506–513.
- 2 Hiba B, Richard N, Thibault H, Janier M. Cardiac and respiratory self-gated cine MRI in the mouse: Comparison between radial and rectilinear techniques at 7 T. Magn. Reson. Med. 2007; 58(4): 745–753.
- 3 Niendorf T, Sodickson D, Krombach G, Schulz-Menger J. Toward cardiovascular MRI at 7 T: clinical needs, technical solutions and research promises. Eur. Radiol. 2010; 20: 2806–2816.
- 4 Tsurugizawa T, Uematsu A, Uneyama H, Torii K. Functional brain mapping of conscious rats during reward anticipation. J. Neurosci. Meth. 2012; 206(2): 132–137.
- 5 Blondiaux E, Pidial L, Vilar J, Autret G, Balvay D, Audureau E, Bruneval P, Bel A, Cuenod CA, Silvestre JS, Clement O. Evaluation of Rat Heart Microvasculature with High-Spatial-Resolution Susceptibility-weighted MR Imaging. Radiology 2013; 269(1): 277–282.
- 6 Hoerr V, Nagelmann N, Nauerth A, Kuhlmann M, Stypmann J, Faber C. Cardiac-respiratory self-gated cine ultra-short echo time (UTE) cardiovascular magnetic resonance for assessment of functional cardiac parameters at high magnetic fields. J. Cardiovasc. Magn. Reson. 2013; 15(1): 59.
- 7 Doenst T, Pytel G, Schrepper A, Amorim P, Färber G, Shingu Y, Mohr FW, Schwarzer M. Decreased rates of substrate oxidation ex vivo predict the onset of heart failure and contractile dysfunction in rats with pressure overload. Cardiovasc. Res. 2010; 86(3): 461–470.
- 8 Schwarzer M, Schrepper A, Amorim PA, Osterholt M, Doenst T. Pressure overload differentially affects respiratory capacity in interfibrillar and subsarcolemmal mitochondria. Am. J. Physiol. Heart Circ. Physiol. 2013; 304(4): H529–H537.
- 9 Amorim PA, Nguyen TD, Shingu Y, Schwarzer M, Mohr FW, Schrepper A, Doenst T. Myocardial infarction in rats causes partial impairment in insulin response associated with reduced fatty acid oxidation and mitochondrial gene expression. J. Thorac. Cardiovasc. Surg. 2010; 140(5): 1160–1167.
- 10 Brockmann MA, Ulmer S, Leppert J, Nadrowitz R, Wuestenberg R, Nolte I, Petersen D, Groden C, Giese A, Gottschalk S. Analysis of mouse brain using a clinical 1.5 T scanner and a standard small loop surface coil. Brain Res. 2006; 1068: 138–142.
- 11 Yamamoto A, Sato H, Enmi J, Ishida K, Ose T, Kimura A, Fujiwara H, Watabe H, Hayashi T, Iida H. Use of a clinical MRI scanner for preclinical research on rats. Radiol. Phys. Technol.. 2009; 2(1): 13–21.
- 12 Gaser C, Schmidt S, Metzler M, Herrmann KH, Krumbein I, Reichenbach JR, Witte OW. Deformation-based brain morphometry in rats. Neuroimage 2012; 63(1): 47–53.
- 13 Herrmann KH, Schmidt S, Kretz A, Haenold R, Krumbein I, Metzler M, Gaser C, Witte O, Reichenbach JR. Possibilities and limitations for high resolution small animal MRI on a clinical whole-body 3 T scanner. Magn. Reson. Mater. Phys. 2012; 25(3): 233–244.
- 14 Hiepe P, Herrmann KH, Guellmar D, Ros C, Siebert T, Blickhan R, Hahn K, Reichenbach JR. Fast low-angle shot diffusion tensor imaging with stimulated echo encoding in the muscle of rabbit shank. NMR Biomed.. 2014; 27(2): 146–157.
- 15 Franco F, Dubois SK, Peshock RM, Shohet RV. Magnetic resonance imaging accurately estimates LV mass in a transgenic mouse model of cardiac hypertrophy. Am. J. Physiol-Heart C 1998; 274(2): H679–H683.
- 16 Arai T, Kofidis T, Bulte JWM, de Bruin J, Venook RD, Berry GJ, Mcconnell MV, Quertermous T, Robbins RC, Yang PC. Dual in vivo magnetic resonance evaluation of magnetically labeled mouse embryonic stem cells and cardiac function at 1.5 T. Magn. Reson. Med. 2006; 55(1): 203–209.
- 17 Daire JL, Jacob JP, Hyacinthe JN, Croisille P, Montet-Abou K, Richter S, Botsikas D, Lepetit-Coiffe M, Morel D, Vallee JP. Cine and tagged cardiovascular magnetic resonance imaging in normal rat at 1.5 T: a rest and stress study. J. Cardiovasc. Magn. Reson. 2008; 10(1): 48.
- 18 Bunck AC, Engelen MA, Schnackenburg B, Furkert J, Bremer C, Heindel W, Stypmann J, Maintz D. Feasibility of Functional Cardiac MR Imaging in Mice Using A Clinical 3 Tesla Whole Body Scanner. Invest. Radiol. 2009; 44(12): 749–756.
- 19 Saleh MG, Sharp SK, Alhamud A, Spottiswoode BS, van der Kouwe AJW, Davies NH, Franz T, Meintjes EM. Long-Term Left Ventricular Remodelling in Rat Model of Nonreperfused Myocardial Infarction: Sequential MR Imaging Using a 3 T Clinical Scanner. J. Biomed. Biotechnol. 2012; 2012: 10.
- 20 Rinkevich-Shop S, Konen E, Kushnir T, Epstein FH, Landa-Rouben N, Goitein O, Ben Mordechai T, Feinberg MS, Afek A, Leor J. Non-invasive assessment of experimental autoimmune myocarditis in rats using a 3 T clinical MRI scanner. Eur. Heart J. Cardiovasc. Imaging 2013; 14(11): 1069–1079.
- 21 Polson MJR, Barker AT, Gardiner S. The effect of rapid rise-time magnetic fields on the ECG of the rat. Clin. Phys. Physiol. Meas. 1982; 3(3): 231.
- 22 Shetty AN. Suppression of radiofrequency interference in cardiac gated MRI: A simple design. Magn. Reson. Med. 1988; 8(1): 84–88.
- 23 Glover GH, Pauly JM. Projection Reconstruction Techniques for Reduction of Motion Effects in MRI. Magn. Reson. Med. 1992; 28(2): 275–289.
- 24 Peters DC, Korosec FR, Grist TM, Block WF, Holden JE, Vigen KK, Mistretta CA. Undersampled projection reconstruction applied to MR angiography. Magn. Reson. Med. 2000; 43(1): 91–101.
- 25 Peters DC, Rohatgi P, Botnar RM, Yeon SB, Kissinger KV, Manning WJ. Characterizing radial undersampling artifacts for cardiac applications. Magn. Reson. Med. 2006; 55(2): 396–403.
- 26 Riederer SJ, Tasciyan T, Farzaneh F, Lee JN, Wright RC, Herfkens RJ. MR fluoroscopy: Technical feasibility. Magn. Reson. Med. 1988; 8(1): 1–15.
- 27 Winkelmann S, Schaeffter T, Koehler T, Eggers H, Doessel O. An Optimal Radial Profile Order Based on the Golden Ratio for Time-Resolved MRI. IEEE Trans. Med. Imaging 2007; 26(1): 68–76.
- 28 Kolbitsch C, Prieto C, Schaeffter T. Cardiac functional assessment without electrocardiogram using physiological self-navigation. Magn. Reson. Med. 2014; 71(3): 942–954.
- 29 Krämer M, Herrmann KH, Biermann J, Reichenbach JR. Retrospective reconstruction of cardiac cine images from golden-ratio radial MRI using one-dimensional navigators. J. Magn. Reson. Imaging 2014; 40(2): 413–22.
- 30 Jochimsen TH, von Mengershausen M. ODIN - Object-oriented Development Interface for NMR. J. Magn. Reson.. 2004; 170(1): 67–78.
- 31 Lin W, Song HK. Improved signal spoiling in fast radial gradient-echo imaging: Applied to accurate T1 mapping and flip angle correction. Magn. Reson. Med. 2009; 62(5): 1185–1194.
- 32 Biermann J, Krämer M, Reichenbach JR. Image Based Correction of Radial Trajectory Shifts. In Proceedings of the 22th Annual Meeting of the International Society for Magnetic Resonance in Medicine; 10–16 May 2014; Milano Italy. 1545.
- 33 Zwart NR, Johnson KO, Pipe JG. Efficient sample density estimation by combining gridding and an optimized kernel. Magn. Reson. Med. 2012; 67(3): 701–710.
- 34 Nishimura DG, Irarrazabal P, Meyer CH. A Velocity k-Space Analysis of Flow Effects in Echo-Planar and Spiral Imaging. Magn. Reson. Med. 1995; 33(4): 549–556.
- 35 Krämer M, Herrmann KH, Reichenbach JR. Robust estimation of true k-space center position for radial center-out trajectories. In Proceedings of the 21th Annual Meeting of the International Society for Magnetic Resonance in Medicine; 20–26 April 2013; Salt-Lake City, USA. 3785.
- 36 Gareis D, Behr VC, Breuer F, Griswold M, Jakob P. Multipurpose 4+4 Channel Array Setup for Parallel Imaging in 3D. In Proceedings of the 14th Annual Meeting of the International Society for Magnetic Resonance in Medicine; 6–12 May 2006; Seattle, USA. 2585.
- 37 Herrmann KH, Pfeiffer N, Krumbein I, Herrmann L, Reichenbach JR. MRI compatible small animal monitoring and trigger system for whole body scanners. Z. Med. Phys. 2014; 24(1): 55–64.