NMReDATA, a standard to report the NMR assignment and parameters of organic compounds
Marion Pupier
Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland
Search for more papers by this authorJean-Marc Nuzillard
Institut de Chimie Moléculaire de Reims, UMR CNRS 7312, BP 1039, 51687, Reims, Cedex 2 France
Search for more papers by this authorJulien Wist
Chemistry Department, Universidad del Valle, 76001 Cali, Colombia
Search for more papers by this authorNils E. Schlörer
Department of Chemistry, University of Cologne, Greinstr. 4, 50939 Köln, Germany
Search for more papers by this authorStefan Kuhn
Department of Chemistry, University of Cologne, Greinstr. 4, 50939 Köln, Germany
Search for more papers by this authorMate Erdelyi
Department of Chemistry – BMC, Uppsala University, Husargatan 3, 752 37 Uppsala, Sweden
Search for more papers by this authorChristoph Steinbeck
Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University, Lessingstr. 8, 07743 Jena, Germany
Search for more papers by this authorAntony J. Williams
National Center for Computational Toxicology, Environmental Protection Agency, 109 T.W. Alexander Drive, Room D131I, Mail Drop D143-02, Research Triangle Park, NC, 27711 USA
Search for more papers by this authorCraig Butts
School of Chemistry, Bristol University, BS8 1TS Bristol, UK
Search for more papers by this authorTim D.W. Claridge
Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Mansfield Road, Oxford, OX1 3TA UK
Search for more papers by this authorBozhana Mikhova
Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Akad. G. Bonchev Str. Bl.9, Sofia, 1113 Bulgaria
Search for more papers by this authorWolfgang Robien
University of Vienna, Department of Organic Chemistry, Währingerstr. 38, 1090 Vienna, Austria
Search for more papers by this authorHesam Dashti
Department of Biochemistry, National Magnetic Resonance Facility at Madison (NMRFAM), 433 Babcock Drive, Madison, WI, USA
Search for more papers by this authorHamid R. Eghbalnia
Department of Biochemistry, National Magnetic Resonance Facility at Madison (NMRFAM), 433 Babcock Drive, Madison, WI, USA
Search for more papers by this authorChristophe Farès
Max-Planck-Institut für Kohlenforschung, Abteilung NMR, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
Search for more papers by this authorChristian Adam
Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
Search for more papers by this authorPavel Kessler
Bruker BioSpin GmbH, Silberstreifen, 76287 Rheinstetten, Germany
Search for more papers by this authorFabrice Moriaud
Bruker BioSpin AG, Industriestrasse 26, 8117 Fällanden, Switzerland
Search for more papers by this authorMikhail Elyashberg
Moscow Department, Advanced Chemistry Development, 6 Akademik Bakulev Street, Moscow, 117513 Russian Federation
Search for more papers by this authorDimitris Argyropoulos
Advanced Chemistry Development, Inc. (ACD/Labs), Venture House, Arlington Square, Downshire Way, Bracknell, Berkshire, RG12 1WA UK
Search for more papers by this authorManuel Pérez
Mestrelab Research, S.L., Feliciano Barrera 9B – Bajo, ES-15706 Santiago de Compostela, Spain
Search for more papers by this authorPatrick Giraudeau
EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM) CNRS, UMR 6230, Université de Nantes, 92208, 2 rue de la Houssinière, BP, 44322 Nantes, France
Institut Universitaire de France, 1 rue Descartes, 75005 Paris Cedex 05, France
Search for more papers by this authorRoberto R. Gil
Department of Chemistry, Carnegie Mellon University, 4400 Fifth Ave., Pittsburgh, PA, 15213 USA
Search for more papers by this authorCorresponding Author
Damien Jeannerat
Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland
Correspondence
Damien Jeannerat, Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland.
Email: [email protected]
Search for more papers by this authorMarion Pupier
Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland
Search for more papers by this authorJean-Marc Nuzillard
Institut de Chimie Moléculaire de Reims, UMR CNRS 7312, BP 1039, 51687, Reims, Cedex 2 France
Search for more papers by this authorJulien Wist
Chemistry Department, Universidad del Valle, 76001 Cali, Colombia
Search for more papers by this authorNils E. Schlörer
Department of Chemistry, University of Cologne, Greinstr. 4, 50939 Köln, Germany
Search for more papers by this authorStefan Kuhn
Department of Chemistry, University of Cologne, Greinstr. 4, 50939 Köln, Germany
Search for more papers by this authorMate Erdelyi
Department of Chemistry – BMC, Uppsala University, Husargatan 3, 752 37 Uppsala, Sweden
Search for more papers by this authorChristoph Steinbeck
Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University, Lessingstr. 8, 07743 Jena, Germany
Search for more papers by this authorAntony J. Williams
National Center for Computational Toxicology, Environmental Protection Agency, 109 T.W. Alexander Drive, Room D131I, Mail Drop D143-02, Research Triangle Park, NC, 27711 USA
Search for more papers by this authorCraig Butts
School of Chemistry, Bristol University, BS8 1TS Bristol, UK
Search for more papers by this authorTim D.W. Claridge
Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Mansfield Road, Oxford, OX1 3TA UK
Search for more papers by this authorBozhana Mikhova
Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Akad. G. Bonchev Str. Bl.9, Sofia, 1113 Bulgaria
Search for more papers by this authorWolfgang Robien
University of Vienna, Department of Organic Chemistry, Währingerstr. 38, 1090 Vienna, Austria
Search for more papers by this authorHesam Dashti
Department of Biochemistry, National Magnetic Resonance Facility at Madison (NMRFAM), 433 Babcock Drive, Madison, WI, USA
Search for more papers by this authorHamid R. Eghbalnia
Department of Biochemistry, National Magnetic Resonance Facility at Madison (NMRFAM), 433 Babcock Drive, Madison, WI, USA
Search for more papers by this authorChristophe Farès
Max-Planck-Institut für Kohlenforschung, Abteilung NMR, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
Search for more papers by this authorChristian Adam
Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
Search for more papers by this authorPavel Kessler
Bruker BioSpin GmbH, Silberstreifen, 76287 Rheinstetten, Germany
Search for more papers by this authorFabrice Moriaud
Bruker BioSpin AG, Industriestrasse 26, 8117 Fällanden, Switzerland
Search for more papers by this authorMikhail Elyashberg
Moscow Department, Advanced Chemistry Development, 6 Akademik Bakulev Street, Moscow, 117513 Russian Federation
Search for more papers by this authorDimitris Argyropoulos
Advanced Chemistry Development, Inc. (ACD/Labs), Venture House, Arlington Square, Downshire Way, Bracknell, Berkshire, RG12 1WA UK
Search for more papers by this authorManuel Pérez
Mestrelab Research, S.L., Feliciano Barrera 9B – Bajo, ES-15706 Santiago de Compostela, Spain
Search for more papers by this authorPatrick Giraudeau
EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM) CNRS, UMR 6230, Université de Nantes, 92208, 2 rue de la Houssinière, BP, 44322 Nantes, France
Institut Universitaire de France, 1 rue Descartes, 75005 Paris Cedex 05, France
Search for more papers by this authorRoberto R. Gil
Department of Chemistry, Carnegie Mellon University, 4400 Fifth Ave., Pittsburgh, PA, 15213 USA
Search for more papers by this authorCorresponding Author
Damien Jeannerat
Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland
Correspondence
Damien Jeannerat, Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland.
Email: [email protected]
Search for more papers by this authorAbstract
Even though NMR has found countless applications in the field of small molecule characterization, there is no standard file format available for the NMR data relevant to structure characterization of small molecules. A new format is therefore introduced to associate the NMR parameters extracted from 1D and 2D spectra of organic compounds to the proposed chemical structure. These NMR parameters, which we shall call NMReDATA (for nuclear magnetic resonance extracted data), include chemical shift values, signal integrals, intensities, multiplicities, scalar coupling constants, lists of 2D correlations, relaxation times, and diffusion rates. The file format is an extension of the existing Structure Data Format, which is compatible with the commonly used MOL format. The association of an NMReDATA file with the raw and spectral data from which it originates constitutes an NMR record. This format is easily readable by humans and computers and provides a simple and efficient way for disseminating results of structural chemistry investigations, allowing automatic verification of published results, and for assisting the constitution of highly needed open-source structural databases.
Supporting Information
Filename | Description |
---|---|
mrc4737-sup-0001-Supplementary_material_V2.pdfPDF document, 108.2 KB |
Data S1. Example of NMReDATA.sdf file including NMReDATA for benzo[a]pyrene Data S2. Pure text translation of the NMReDATA.sdf of benzo[a]pyrene |
Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
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