Volume 56, Issue 8 p. 703-715
FEATURE ARTICLE RESEARCH ARTICLE

NMReDATA, a standard to report the NMR assignment and parameters of organic compounds

Marion Pupier

Marion Pupier

Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland

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Jean-Marc Nuzillard

Jean-Marc Nuzillard

Institut de Chimie Moléculaire de Reims, UMR CNRS 7312, BP 1039, 51687, Reims, Cedex 2 France

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Julien Wist

Julien Wist

Chemistry Department, Universidad del Valle, 76001 Cali, Colombia

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Nils E. Schlörer

Nils E. Schlörer

Department of Chemistry, University of Cologne, Greinstr. 4, 50939 Köln, Germany

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Stefan Kuhn

Stefan Kuhn

Department of Chemistry, University of Cologne, Greinstr. 4, 50939 Köln, Germany

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Mate Erdelyi

Mate Erdelyi

Department of Chemistry – BMC, Uppsala University, Husargatan 3, 752 37 Uppsala, Sweden

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Christoph Steinbeck

Christoph Steinbeck

Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University, Lessingstr. 8, 07743 Jena, Germany

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Antony J. Williams

Antony J. Williams

National Center for Computational Toxicology, Environmental Protection Agency, 109 T.W. Alexander Drive, Room D131I, Mail Drop D143-02, Research Triangle Park, NC, 27711 USA

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Craig Butts

Craig Butts

School of Chemistry, Bristol University, BS8 1TS Bristol, UK

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Tim D.W. Claridge

Tim D.W. Claridge

Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Mansfield Road, Oxford, OX1 3TA UK

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Bozhana Mikhova

Bozhana Mikhova

Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Akad. G. Bonchev Str. Bl.9, Sofia, 1113 Bulgaria

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Wolfgang Robien

Wolfgang Robien

University of Vienna, Department of Organic Chemistry, Währingerstr. 38, 1090 Vienna, Austria

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Hesam Dashti

Hesam Dashti

Department of Biochemistry, National Magnetic Resonance Facility at Madison (NMRFAM), 433 Babcock Drive, Madison, WI, USA

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Hamid R. Eghbalnia

Hamid R. Eghbalnia

Department of Biochemistry, National Magnetic Resonance Facility at Madison (NMRFAM), 433 Babcock Drive, Madison, WI, USA

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Christophe Farès

Christophe Farès

Max-Planck-Institut für Kohlenforschung, Abteilung NMR, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany

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Christian Adam

Christian Adam

Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany

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Pavel Kessler

Pavel Kessler

Bruker BioSpin GmbH, Silberstreifen, 76287 Rheinstetten, Germany

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Fabrice Moriaud

Fabrice Moriaud

Bruker BioSpin AG, Industriestrasse 26, 8117 Fällanden, Switzerland

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Mikhail Elyashberg

Mikhail Elyashberg

Moscow Department, Advanced Chemistry Development, 6 Akademik Bakulev Street, Moscow, 117513 Russian Federation

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Dimitris Argyropoulos

Dimitris Argyropoulos

Advanced Chemistry Development, Inc. (ACD/Labs), Venture House, Arlington Square, Downshire Way, Bracknell, Berkshire, RG12 1WA UK

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Manuel Pérez

Manuel Pérez

Mestrelab Research, S.L., Feliciano Barrera 9B – Bajo, ES-15706 Santiago de Compostela, Spain

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Patrick Giraudeau

Patrick Giraudeau

EBSI Team, Chimie et Interdisciplinarité: Synthèse, Analyse, Modélisation (CEISAM) CNRS, UMR 6230, Université de Nantes, 92208, 2 rue de la Houssinière, BP, 44322 Nantes, France

Institut Universitaire de France, 1 rue Descartes, 75005 Paris Cedex 05, France

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Roberto R. Gil

Roberto R. Gil

Department of Chemistry, Carnegie Mellon University, 4400 Fifth Ave., Pittsburgh, PA, 15213 USA

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Paul Trevorrow

Paul Trevorrow

Wiley, The Atrium, Chichester, PO19 8SQ UK

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Damien Jeannerat

Corresponding Author

Damien Jeannerat

Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland

Correspondence

Damien Jeannerat, Department of Organic Chemistry, University of Geneva, 30 Quai E. Ansermet, 1211 Geneva 4, Switzerland.

Email: [email protected]

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First published: 14 April 2018
Citations: 67

Abstract

Even though NMR has found countless applications in the field of small molecule characterization, there is no standard file format available for the NMR data relevant to structure characterization of small molecules. A new format is therefore introduced to associate the NMR parameters extracted from 1D and 2D spectra of organic compounds to the proposed chemical structure. These NMR parameters, which we shall call NMReDATA (for nuclear magnetic resonance extracted data), include chemical shift values, signal integrals, intensities, multiplicities, scalar coupling constants, lists of 2D correlations, relaxation times, and diffusion rates. The file format is an extension of the existing Structure Data Format, which is compatible with the commonly used MOL format. The association of an NMReDATA file with the raw and spectral data from which it originates constitutes an NMR record. This format is easily readable by humans and computers and provides a simple and efficient way for disseminating results of structural chemistry investigations, allowing automatic verification of published results, and for assisting the constitution of highly needed open-source structural databases.